PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G07210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 483aa    MW: 47899.4 Da    PI: 6.7696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G07210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12265310555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  LPERR09G07210.1 265 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 310
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-16258317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-12258313No hitNo description
PROSITE profilePS5088817.39260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15262317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9265310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MQPTTREMQA MAAAAAAGGA GQISLDDLRN GHAANAGGGG GVHDDFLDQM LSSLPPSAWP  60
DLAAAAAKAA EDDAAAEGMH HHHQQFGGPP TPYDESAMLA SRLRQHQISG GGGGGGGGGG  120
AAAVKQMVLQ QLADLRQGHH MMLHGMGRSP ASGGGGGGDG GGGLLLPLSL GSGGGGSGGD  180
VQALLKAATA NSAGGGDDGV YGGFAGSLQQ QQQHFQPHPQ TTAPTMPTQS FGGGGGAAQA  240
QAGGGAPAPP RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD  300
EIIDYVKFLQ LQVLSMSRLG GAAAVAPLVA DMSSEGRGGG AANGGGAPAA AASDSLTVTE  360
QQVAKLMEED MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVAAQHI PAGLAAAAAH  420
HQQLAMRGHH HLLPGLNPDG SVPPSPSMSV LTAQSAMANG GGGGGGDGEG GSQPKDAASV  480
SKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141950.11e-155putative HLH DNA-binding domain superfamily protein
SwissprotQ9ZUG93e-78BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D9XDR90.0A0A0D9XDR9_9ORYZ; Uncharacterized protein
STRINGGRMZM2G350165_P021e-153(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-46LJRHL1-like 1